ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR159
source: miRBase, original name: osa-MIR159b (MI0001093)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTTTCGTTCCAATGA mismatches: 4 bulges: 0 |
pre-miRNA
GGTTATGAAGTGGAGCTCCTTTCGTTCCAATGAAAGGTTTATCTGAAGGGTGATACAGCTGCTTGTTCATGGTTCCCACTATTCTATCTCATAGGAAAAG
AGATAGGCTTGTGGTTTGCATGACCAAGGAGCCGAATCAACTCCTTGCTGACCACTCTTTGGATTGAAGGGAGCTCTGCATCTTGATC
dot-bracket secondary structure
(((((.((.(..((((((((((((.(((((.((..((((......(((((((((.(.(((.((((.(((((....((((...((((((((.........)
)))))))...))))....))))).)))).))).).))).)).))))...))))..)).))))).))))))))))))..).)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GGTTATGAAGTGGAGCTCCTTTCGTTCCAATGAAAGGTTTATCTGAAGGGTGATACAGCTGCTTGTTCATGGTTCCCACTATTCTATCTCATAGGAAAAG
AGATAGGCTTGTGGTTTGCATGACCAAGGAGCCGAATCAACTCCTTGCTGACCACTCTTTGGATTGAAGGGAGCTCTGCATCTTGATC
dot-bracket secondary structure
(((((.((.(..((((((((((((.(((((.((..((((......(((((((((.(.(((.((((.(((((....((((...((((((((.........)
)))))))...))))....))))).)))).))).).))).)).))))...))))..)).))))).))))))))))))..).)).)))))
SIMILARITIES| miRBase hvu-MIR159a: 5e-23 PMRD osa-miR159b: 3e-104 microPC miR319: 0.000000000003 | UniProt no hits RFAM MIR159: 5e-85 |
Identical with: osa-miR159b from PMRD (MNEST048820) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
