ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR159
source: miRBase, original name: osa-MIR159c (MI0001094)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGATTGAAGGGAGCTCCA miRNA* GAGCTCCTTTCGATCCAATTC mismatches: 1 bulges: 0 |
pre-miRNA
GAGGAGGAAGAGGAGCTCCTTTCGATCCAATTCAGGAGAGGAAGTGGTAGGATGCAGCTGCCGATTCATGGATACCTCTGGAGTGCATGGCAGCAATGCT
GTAGGCCTGCACTTGCATGGGTTTGCATGACCCGGGAGATGAACCCACCATTGTCTTCCTCTATTGATTGGATTGAAGGGAGCTCCACATCTCTCTC
dot-bracket secondary structure
(((..(((.(.((((((((((((((((((((.(((.((((((((((((.((...((.((.(((..(((((.(.((((.(((((((((.(((.(((....)
))..)))))))))).)).)))).).)))))..))).)).))..)).))))....)))))))).))))))))))))))))))))))).).)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GAGGAGGAAGAGGAGCTCCTTTCGATCCAATTCAGGAGAGGAAGTGGTAGGATGCAGCTGCCGATTCATGGATACCTCTGGAGTGCATGGCAGCAATGCT
GTAGGCCTGCACTTGCATGGGTTTGCATGACCCGGGAGATGAACCCACCATTGTCTTCCTCTATTGATTGGATTGAAGGGAGCTCCACATCTCTCTC
dot-bracket secondary structure
(((..(((.(.((((((((((((((((((((.(((.((((((((((((.((...((.((.(((..(((((.(.((((.(((((((((.(((.(((....)
))..)))))))))).)).)))).).)))))..))).)).))..)).))))....)))))))).))))))))))))))))))))))).).)))..)))
SIMILARITIES| miRBase osa-MIR159f: 3e-58 PMRD osa-miR159c: 1e-109 microPC miR319: 8e-22 | UniProt no hits RFAM MIR159: 3e-108 |
Identical with: osa-miR159c from PMRD (MNEST048821) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
