ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR159
source: miRBase, original name: osa-MIR159e (MI0001096)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTTCGATCCAATTC mismatches: 1 bulges: 1 |
pre-miRNA
GATGAAGAAGAAGAGCTCCCTTTCGATCCAATTCAGGAGAGGAAGTGGTAGGATGCAGCTGCCGGTTCATGGATACCTCTGGAGTGCAGGGCAAATAGTC
CTACCCTTTCATGGGTTTGCATGACTCGGGAGATGAACCCGCCATTGTCTTCCTCTATTGATTGGATTGAAGGGAGCTCCTCTAGCTACAT
dot-bracket secondary structure
.(((.((.(((.((((((((((.(((((((((.(((.(((((((((((..((...((.((.(((..(((((.(.((((.(((((.(.(((((.....)))
)).).).)))).)))).).)))))..))).)).))..))..)))....)))))))).)))))))))))))))))))))).)))..)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GATGAAGAAGAAGAGCTCCCTTTCGATCCAATTCAGGAGAGGAAGTGGTAGGATGCAGCTGCCGGTTCATGGATACCTCTGGAGTGCAGGGCAAATAGTC
CTACCCTTTCATGGGTTTGCATGACTCGGGAGATGAACCCGCCATTGTCTTCCTCTATTGATTGGATTGAAGGGAGCTCCTCTAGCTACAT
dot-bracket secondary structure
.(((.((.(((.((((((((((.(((((((((.(((.(((((((((((..((...((.((.(((..(((((.(.((((.(((((.(.(((((.....)))
)).).).)))).)))).).)))))..))).)).))..))..)))....)))))))).)))))))))))))))))))))).)))..)).)))
SIMILARITIES| miRBase osa-MIR159c: 3e-55 PMRD osa-miR159e: 5e-106 microPC miR319: 4e-17 | UniProt no hits RFAM MIR159: 1e-104 |
Identical with: osa-miR159e from PMRD (MNEST048823) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
