ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRBase, original name: osa-MIR160b (MI0000664)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCAAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
AAGGTTTGGTTTTGATCGGCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAA
GGAGCCAAGCATGCGTGCCATGATCTCTCTTTCTGCCTT
dot-bracket secondary structure
(((((..((....(((((((......((((((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).
))))))).))))))..)))..))))...))....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
AAGGTTTGGTTTTGATCGGCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAA
GGAGCCAAGCATGCGTGCCATGATCTCTCTTTCTGCCTT
dot-bracket secondary structure
(((((..((....(((((((......((((((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).
))))))).))))))..)))..))))...))....)))))
SIMILARITIES| miRBase zma-MIR160g: 2e-30 PMRD osa-miR160b: 4e-75 microPC miR160: 1e-38 | UniProt no hits RFAM mir-160: 2e-43 |
Identical with: osa-miR160m from PMRD (MNEST048832) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
