ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRBase, original name: osa-MIR160e (MI0001100)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCG miRNA* GCGTGCGAGGTGCCAAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
GTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCA
AGCATGGCCCTCTT
dot-bracket secondary structure
...((((.(((((.((((.((.(((((((((..((((..((.((((((..(((((........))))))))))).))))))..))))))))).)).))))
.))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCA
AGCATGGCCCTCTT
dot-bracket secondary structure
...((((.(((((.((((.((.(((((((((..((((..((.((((((..(((((........))))))))))).))))))..))))))))).)).))))
.))))).))))...
SIMILARITIES| miRBase zma-MIR160d: 0.000000000000006 PMRD osa-miR160e: 3e-60 microPC miR160: 0.000000000002 | UniProt no hits RFAM mir-160: 1e-50 |
Identical with: osa-miR160e from PMRD (MNEST048830) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
