ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRBase, original name: osa-MIR164a (MI0000668)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGGTCTCCTTCTCCATC mismatches: 2 bulges: 0 |
pre-miRNA
GTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGTGTGGGTTGGAAGT
TTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCAC
dot-bracket secondary structure
(((((((((((((.(.((((((((.(((.(((((((((((....((((......((((.(((((.((..(.(..((....))...).)..))..))))).
..)))).))))..))).)))))))).))).)))))))).).))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGTGTGGGTTGGAAGT
TTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCAC
dot-bracket secondary structure
(((((((((((((.(.((((((((.(((.(((((((((((....((((......((((.(((((.((..(.(..((....))...).)..))..))))).
..)))).))))..))).)))))))).))).)))))))).).))))))..)))))))
SIMILARITIES| miRBase bdi-MIR164d: 6e-16 PMRD osa-miR164a: 3e-85 microPC miR164: 0.00003 | UniProt no hits RFAM MIR164: 1e-75 |
Identical with: osa-miRf11199-akr from PMRD (MNEST050414) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
