ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRBase, original name: osa-MIR164c (MI0001103)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGTACGTGCA miRNA* CACGTGCTCCCCTTCTCCACC mismatches: 2 bulges: 0 |
pre-miRNA
AGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCC
CCTTCTCCACCATGGCCTT
dot-bracket secondary structure
(((((..((.((((((((..(((((((((((.......(((((((((.(((((((........))))).)))))))..))))......))))))))))).
.)))))))).)).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
AGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCC
CCTTCTCCACCATGGCCTT
dot-bracket secondary structure
(((((..((.((((((((..(((((((((((.......(((((((((.(((((((........))))).)))))))..))))......))))))))))).
.)))))))).)).))))).
SIMILARITIES| miRBase bdi-MIR164e: 0.00000002 PMRD osa-miR164c: 3e-63 microPC miR164: 3e-51 | UniProt no hits RFAM MIR164: 5e-62 |
Identical with: miR164 from microPC (MNEST045884) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
