ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRBase, original name: osa-MIR164f (MI0001159)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCCTTCTTCTCCACC mismatches: 1 bulges: 0 |
pre-miRNA
TGAGGATGGCGAGGCGCGCGAGGTGGAGAAGCAGGGCACGTGCATTCCTAGAGCTTCCGTCCAGCTCCCCGGCGGGCTAGCTAGCTCACTCCGCCGCCGC
CGCCGCCGCCGCCGGCGCGCGCACGGCTGGCTGGCTCCGGCCGGCTGAGATGCATGCACGGATGCATGTGCCCTTCTTCTCCACCGTGCACGCCTCGCCT
GCAGCAAGGA
dot-bracket secondary structure
((..(..(((((((((.(((.((((((((((.(((((((((((((((...(.((...(((((((((..((((..((((((((((((.....(((((((((
.((....)).).))))).)))...))))))))))))))))..))))).))))...)).)))))))))))))))).)))))))))).))).))))))))).
.)..))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
TGAGGATGGCGAGGCGCGCGAGGTGGAGAAGCAGGGCACGTGCATTCCTAGAGCTTCCGTCCAGCTCCCCGGCGGGCTAGCTAGCTCACTCCGCCGCCGC
CGCCGCCGCCGCCGGCGCGCGCACGGCTGGCTGGCTCCGGCCGGCTGAGATGCATGCACGGATGCATGTGCCCTTCTTCTCCACCGTGCACGCCTCGCCT
GCAGCAAGGA
dot-bracket secondary structure
((..(..(((((((((.(((.((((((((((.(((((((((((((((...(.((...(((((((((..((((..((((((((((((.....(((((((((
.((....)).).))))).)))...))))))))))))))))..))))).))))...)).)))))))))))))))).)))))))))).))).))))))))).
.)..))....
SIMILARITIES| miRBase bdi-MIR164f: 8e-16 PMRD osa-miR164f: 1e-45 microPC miR164: 0.00001 | UniProt no hits RFAM MIR164: 1e-36 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
