ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRBase, original name: osa-MIR166a (MI0000670)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
TGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATC
CGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCA
dot-bracket secondary structure
.(((((((((....((((((.((((((..(((((((((.((((((((((.(((....)))...((((((((...............))).))))).....
)))))))))).)))))))))..)))))).))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
TGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATC
CGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCA
dot-bracket secondary structure
.(((((((((....((((((.((((((..(((((((((.((((((((((.(((....)))...((((((((...............))).))))).....
)))))))))).)))))))))..)))))).))))))))))))))).
SIMILARITIES| miRBase bdi-MIR166c: 3e-17 PMRD osa-miR166a: 1e-78 microPC miR166: 3e-54 | UniProt no hits RFAM mir-166: 3e-58 |
Identical with: osa-miR166a from PMRD (MNEST048844) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
