ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRBase, original name: osa-MIR166b (MI0000671)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGGGG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCT
TTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGG
GCTCCC
dot-bracket secondary structure
(((((((((((...((((.((((((((..((((((..(((((((((.....(((((((((((((((((((((((..(((((.((((.........((((.
...)))).........))))...))))))))))..))).)))))).))))).))))....)))).)))))..))))))..)))))))).))))..)))))
))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCT
TTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGG
GCTCCC
dot-bracket secondary structure
(((((((((((...((((.((((((((..((((((..(((((((((.....(((((((((((((((((((((((..(((((.((((.........((((.
...)))).........))))...))))))))))..))).)))))).))))).))))....)))).)))))..))))))..)))))))).))))..)))))
))))))
SIMILARITIES| miRBase bdi-MIR166b: 8e-16 PMRD osa-miR166b: 1e-48 microPC miR166: 6e-38 | UniProt no hits RFAM mir-166: 1e-39 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
