ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRBase, original name: osa-MIR166g (MI0001142)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGGAGGCTGATCCAAGA mismatches: 5 bulges: 0 |
pre-miRNA
AGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTT
TGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCT
dot-bracket secondary structure
((((((((((..(((((((((.(((.(((.(((((...((((((.((((((.(((((((((((......)))))).)))))....))))))..))))))(
((....))).))))).))).))).)))))))))..))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
AGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTT
TGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCT
dot-bracket secondary structure
((((((((((..(((((((((.(((.(((.(((((...((((((.((((((.(((((((((((......)))))).)))))....))))))..))))))(
((....))).))))).))).))).)))))))))..))))))))))
SIMILARITIES| miRBase bdi-MIR166f: 0.0000000000005 PMRD osa-miR166g: 1e-78 microPC miR166: 0.000002 | UniProt no hits RFAM mir-166: 2e-71 |
Identical with: osa-miR166g from PMRD (MNEST048850) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
