ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167a (MI0000676)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCATGACAGCCTCATT mismatches: 2 bulges: 1 |
pre-miRNA
TAGTGTGAATGAGTGAAGCTGCCAGCATGATCTAGCTCTGATTAATCGGCACTGTTGGCGTACAGTCGATTGACTAATCGTCAGATCTGTGTGTGTAAAT
CACTGTTAGATCATGCATGACAGCCTCATTTCTTCACACTG
dot-bracket secondary structure
(((((((((.((((((.((((.((((((((((((((..(((((.((..((((..((((((...((((....))))...))))))....))))..)).)))
))..)))))))))))).)).)))).)))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
TAGTGTGAATGAGTGAAGCTGCCAGCATGATCTAGCTCTGATTAATCGGCACTGTTGGCGTACAGTCGATTGACTAATCGTCAGATCTGTGTGTGTAAAT
CACTGTTAGATCATGCATGACAGCCTCATTTCTTCACACTG
dot-bracket secondary structure
(((((((((.((((((.((((.((((((((((((((..(((((.((..((((..((((((...((((....))))...))))))....))))..)).)))
))..)))))))))))).)).)))).)))))).)))))))))
SIMILARITIES| miRBase zma-MIR167a: 0.00000000000003 PMRD osa-miR167a: 3e-76 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 2e-74 |
Identical with: osa-miR167a from PMRD (MNEST048858) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
