ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167d (MI0001109)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGCTGTGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
CATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCAGATCATGCTGTGCAGTTTCA
TCTGCTTGTG
dot-bracket secondary structure
(((.((.((.(((((((((((((((((((((((....(((.....)))...(((((......))))).........)))))))))))))).)))))))))
.)).)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCAGATCATGCTGTGCAGTTTCA
TCTGCTTGTG
dot-bracket secondary structure
(((.((.((.(((((((((((((((((((((((....(((.....)))...(((((......))))).........)))))))))))))).)))))))))
.)).)).)))
SIMILARITIES| miRBase bdi-MIR167c: 0.0000000000004 PMRD osa-miRf11210-akr: 6e-58 microPC miR167: 0.0000003 | UniProt no hits RFAM MIR167_1: 1e-56 |
Identical with: osa-miR167n from PMRD (MNEST048870) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
