ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167f (MI0001111)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCTGGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
CACAAGTGGATGAAGCTGCCAGCATGATCTGATCACAGTAGTTCTCTAGCTGATGATGATTTACAAAACCTAGAGACATGCATCAGATCATCTGGCAGTT
TCATCTTCTCATG
dot-bracket secondary structure
((..((.(((((((((((((((.((((((((((....(((..(((((((.(..((........))..).)))))))..))))))))))))))))))))))
)))))).))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CACAAGTGGATGAAGCTGCCAGCATGATCTGATCACAGTAGTTCTCTAGCTGATGATGATTTACAAAACCTAGAGACATGCATCAGATCATCTGGCAGTT
TCATCTTCTCATG
dot-bracket secondary structure
((..((.(((((((((((((((.((((((((((....(((..(((((((.(..((........))..).)))))))..))))))))))))))))))))))
)))))).))..))
SIMILARITIES| miRBase sbi-MIR167f: 0.00000002 PMRD osa-miR167f: 1e-59 microPC miR167: 0.000005 | UniProt no hits RFAM MIR167_1: 2e-58 |
Identical with: osa-miR167f from PMRD (MNEST048864) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
