ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167h (MI0001113)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
CACAAGTTGGTGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATGC
TGTAGTTTCATCTGCTGGTT
dot-bracket secondary structure
.((.(((.(((((((((((.(((((((((((((..((((..((((((.......(((..........)))........))))))))))))))))))))))
)))))))))))).))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CACAAGTTGGTGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATGC
TGTAGTTTCATCTGCTGGTT
dot-bracket secondary structure
.((.(((.(((((((((((.(((((((((((((..((((..((((((.......(((..........)))........))))))))))))))))))))))
)))))))))))).))).)).
SIMILARITIES| miRBase sof-MIR167b: 0.0000000001 PMRD osa-miR167h: 5e-37 microPC miR167: 5e-31 | UniProt no hits RFAM MIR167_1: 1e-35 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
