ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167j (MI0001156)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCGTGCTGCGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
TTGTGATGTGTGCACCTTAAGCAGCTGAAGCTGCCAGCATGATCTGATCTTTTGCGATCTCTTTTTTTATCTGAATAAGTTGATGGAAATATTGGGTTCC
TAAGATTCAGATCGTGCTGCGCAGTTTCATCTGCTAATCGATGCACTACACTGTGAATTT
dot-bracket secondary structure
(..(..(((((((((..(.(((((.((((((((((((((((((((((((((..(.((.(((..((((((((..........))))))))....))).)))
.)))).))))))))))))).))))))))).))))).)..).))))).)))..)..)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
TTGTGATGTGTGCACCTTAAGCAGCTGAAGCTGCCAGCATGATCTGATCTTTTGCGATCTCTTTTTTTATCTGAATAAGTTGATGGAAATATTGGGTTCC
TAAGATTCAGATCGTGCTGCGCAGTTTCATCTGCTAATCGATGCACTACACTGTGAATTT
dot-bracket secondary structure
(..(..(((((((((..(.(((((.((((((((((((((((((((((((((..(.((.(((..((((((((..........))))))))....))).)))
.)))).))))))))))))).))))))))).))))).)..).))))).)))..)..)....
SIMILARITIES| miRBase sbi-MIR167g: 9e-18 PMRD osa-miR167j: 5e-75 microPC miR167: 3e-39 | UniProt no hits RFAM MIR167_1: 3e-55 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
