ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR168
source: miRBase, original name: osa-MIR168a (MI0001115)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
CGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCG
dot-bracket secondary structure
((.(((.(..(((((((((((((..(((((.(((..(((.(((....))))))))).)))))..)))))))))))))..).))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCG
dot-bracket secondary structure
((.(((.(..(((((((((((((..(((((.(((..(((.(((....))))))))).)))))..)))))))))))))..).))).))
SIMILARITIES| miRBase osa-MIR168a: 3e-44 PMRD osa-miR168a: 3e-44 microPC miR168: 0.0000000000003 | UniProt no hits RFAM MIR168: 5e-43 |
Identical with: osa-miR168m from PMRD (MNEST048875) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
