ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169a (MI0000679)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTTCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
CGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGAT
CCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGCG
dot-bracket secondary structure
((((((((((((.((((.((((.(((.(((((.((((.(((((((((..((((((((((.(((.(((..(((((((.(((((...)))))...)))))))
..))).))).))))))))))..))))))))).)))).))))).))).)))).)))).))))).)))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
CGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGAT
CCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGCG
dot-bracket secondary structure
((((((((((((.((((.((((.(((.(((((.((((.(((((((((..((((((((((.(((.(((..(((((((.(((((...)))))...)))))))
..))).))).))))))))))..))))))))).)))).))))).))).)))).)))).))))).)))...))))
SIMILARITIES| miRBase zma-MIR169a: 0.00000000004 PMRD osa-miR169a: 3e-95 microPC miR169: 4e-48 | UniProt no hits RFAM MIR169_2: 8e-62 |
Identical with: osa-miR169a from PMRD (MNEST048876) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
