ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169c (MI0001118)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTACA mismatches: 1 bulges: 1 |
pre-miRNA
GAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGC
TACACCTAGCTC
dot-bracket secondary structure
....(((.((.((((((((((((((((((((((.......((.((((....(((((...)))))....)))).))...)))))))))))).)))))))))
).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGC
TACACCTAGCTC
dot-bracket secondary structure
....(((.((.((((((((((((((((((((((.......((.((((....(((((...)))))....)))).))...)))))))))))).)))))))))
).))))).....
SIMILARITIES| miRBase bdi-MIR169c: 4e-25 PMRD osa-miRf10630-akr: 4e-59 microPC miR169: 4e-47 | UniProt no hits RFAM MIR169_2: 7e-58 |
Identical with: miR169 from microPC (MNEST044916) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
