ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169_1
source: miRBase, original name: osa-MIR169d (MI0001119)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGAATTGCCGG miRNA* GGCAAGTCATTTCAGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
ATTTATCGTGTAGCCAAGGATGAATTGCCGGCGTTTCACGCTGTTGATGGTGCGTGCATATATAAGTTGGCGCCGGCAAGTCATTTCAGGCTACATGTTT
GCC
dot-bracket secondary structure
......(((((((((..((((((.(((((((((((.(((((..........)))))............))))))))))).))))))..)))))))))...
...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
ATTTATCGTGTAGCCAAGGATGAATTGCCGGCGTTTCACGCTGTTGATGGTGCGTGCATATATAAGTTGGCGCCGGCAAGTCATTTCAGGCTACATGTTT
GCC
dot-bracket secondary structure
......(((((((((..((((((.(((((((((((.(((((..........)))))............))))))))))).))))))..)))))))))...
...
SIMILARITIES| miRBase vvi-MIR169v: 0.00002 PMRD osa-miR169d: 9e-54 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 2e-52 |
Identical with: osa-miR169d from PMRD (MNEST048879) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
