ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169_1
source: miRBase, original name: osa-MIR169e (MI0001120)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTATTTTCTTTGGCTACA mismatches: 0 bulges: 3 |
pre-miRNA
GCTGGTTGTGTAGCCAAGGATGACTTGCCGGCCTGGTTTGTGTTCATCAGCAATCCAGCATATGCTGTATTGCCGTGTGTGATCGATCGATGCATGGACC
GGCAAGTTATTTTCTTTGGCTACATTACAACC
dot-bracket secondary structure
...((((((((((((((((((((((((((((((((..(((...(((((((((((.((((....)))).)))))..)).)))).....)))..)).)).))
)))))))))...)))))))))))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GCTGGTTGTGTAGCCAAGGATGACTTGCCGGCCTGGTTTGTGTTCATCAGCAATCCAGCATATGCTGTATTGCCGTGTGTGATCGATCGATGCATGGACC
GGCAAGTTATTTTCTTTGGCTACATTACAACC
dot-bracket secondary structure
...((((((((((((((((((((((((((((((((..(((...(((((((((((.((((....)))).)))))..)).)))).....)))..)).)).))
)))))))))...)))))))))))...))))))
SIMILARITIES| miRBase sbi-MIR169j: 0.0000004 PMRD osa-miR169e: 6e-71 microPC miR169: 0.000006 | UniProt no hits RFAM MIR169_2: 1e-69 |
Identical with: osa-miR169e from PMRD (MNEST048880) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
