ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169g (MI0001122)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
CTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGG
CAGTCTCCTTGGCTAGCCTGAGTGGC
dot-bracket secondary structure
..(((.((((((((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...))))))
)))))))))))))).)))..)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGG
CAGTCTCCTTGGCTAGCCTGAGTGGC
dot-bracket secondary structure
..(((.((((((((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...))))))
)))))))))))))).)))..)).)))
SIMILARITIES| miRBase zma-MIR169g: 0.0000000001 PMRD osa-miR169g: 2e-67 microPC miR169: 2e-55 | UniProt no hits RFAM MIR169_5: 4e-66 |
Identical with: miR169 from microPC (MNEST045637) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
