ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169h (MI0001123)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
TTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGTAAGGATCATTAATTATTATTCAGAAAATGATCCTTTCAGCAGGTTTCATGGGCAGT
CTCCTTGGCTAGCCTGAGTGAT
dot-bracket secondary structure
...((((.((((((((((((.((((.(((((((..(((((.((.((((((((((...............)))))))))).)))))))...))))))))))
)))))))))).))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGTAAGGATCATTAATTATTATTCAGAAAATGATCCTTTCAGCAGGTTTCATGGGCAGT
CTCCTTGGCTAGCCTGAGTGAT
dot-bracket secondary structure
...((((.((((((((((((.((((.(((((((..(((((.((.((((((((((...............)))))))))).)))))))...))))))))))
)))))))))).))).))))...
SIMILARITIES| miRBase osa-MIR169i: 1e-16 PMRD osa-miR169h: 5e-65 microPC miR169: 0.00000000003 | UniProt no hits RFAM MIR169_5: 9e-64 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
