ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169k (MI0001126)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGTC mismatches: 0 bulges: 3 |
pre-miRNA
TCTGTCTAGATAGCCAAGGATGACTTGCCTGTGGCCTCTTGGAGAGAGAGGTGTAGCTTAATTAGCAGCATGGTTTGAGCATTGCTTGATCGGTTGATCG
CTTCGCTTGCTCTGCATGAGATCTTACAGGCAGTCTCCTTGGCTAGTCTGGGCGGC
dot-bracket secondary structure
.(((((((((((((((((((.((((.(((((((..(((.((.((((..(((((.(((........((((.(((.(..(((...)))..))))))))...)
)).))))).)))).)).)))..)..))))))))))))))))))).)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TCTGTCTAGATAGCCAAGGATGACTTGCCTGTGGCCTCTTGGAGAGAGAGGTGTAGCTTAATTAGCAGCATGGTTTGAGCATTGCTTGATCGGTTGATCG
CTTCGCTTGCTCTGCATGAGATCTTACAGGCAGTCTCCTTGGCTAGTCTGGGCGGC
dot-bracket secondary structure
.(((((((((((((((((((.((((.(((((((..(((.((.((((..(((((.(((........((((.(((.(..(((...)))..))))))))...)
)).))))).)))).)).)))..)..))))))))))))))))))).)))))))))).
SIMILARITIES| miRBase sbi-MIR169g: 0.0000000000005 PMRD osa-miR169k: 3e-85 microPC miR169: 0.000000008 | UniProt no hits RFAM MIR169_5: 6e-84 |
Identical with: osa-miR169k from PMRD (MNEST048886) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
