ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRBase, original name: osa-MIR169l (MI0001127)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
TTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTCCCTGAAGGATTAGCAATTTAATGATCCTTTAAGCTGGTTCATGGGCAGTCTCCTTGGCTAGC
CTGAGTGG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((..(.((((((((((.........)))))))))).)..))..)))))))))))))))))))))..
..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTCCCTGAAGGATTAGCAATTTAATGATCCTTTAAGCTGGTTCATGGGCAGTCTCCTTGGCTAGC
CTGAGTGG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((..(.((((((((((.........)))))))))).)..))..)))))))))))))))))))))..
..)))...
SIMILARITIES| miRBase osa-MIR169q: 1e-56 PMRD osa-miR169q: 1e-56 microPC miR169: 1e-43 | UniProt no hits RFAM MIR169_5: 2e-55 |
Identical with: miR169 from microPC (MNEST046089) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
