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ABOUT THIS RECORD
ID:
MNEST041980
species:
Oryza sativa
miRNA family:
MIR169_5
source:
miRBase, original name:
osa-MIR169q
(
MI0001132
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGAGACTGCCCATG
miRNA*
CAGGCAAGTCATCCTTGGCTATC
mismatches:
2
bulges:
2
View larger
pre-miRNA
CCACTCAGGC
TAGCCAAGGAGACTGCCCATG
AACCAGCTTAAAGGATCATTAAATTGCTAATCCTTCAGGGAGGACA
CAGGCAAGTCATCCTTGGCTATC
AGAGATAA
dot-bracket secondary structure
...(((.((.
(((((((((((((((((..((
..((..(((.((((((((......))...)))))).)))..)).))
..))).)))).))))))))))))
.)))....
SIMILARITIES
miRBase
osa-MIR169l
:
1e-56
PMRD
osa-miR169q
:
1e-56
microPC
miR169
:
1e-43
UniProt
no hits
RFAM
MIR169_5: 2e-55
Identical with:
miR169
from microPC (
MNEST046089
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"