ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR171
source: miRBase, original name: osa-MIR171a (MI0000680)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGTGAGGTTCAATCCGA mismatches: 2 bulges: 0 |
pre-miRNA
GGAAAGAGCGATATTGGTGAGGTTCAATCCGATGATTGGTTTTACAGCAGTGGTAAAATCAGTATCTGATTGAGCCGCGCCAATATCTCTTCCTCT
dot-bracket secondary structure
((((.((..((((((((((.(((((((((.(((.(((((((((((.......)))))))))))))).))))))))).))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGAAAGAGCGATATTGGTGAGGTTCAATCCGATGATTGGTTTTACAGCAGTGGTAAAATCAGTATCTGATTGAGCCGCGCCAATATCTCTTCCTCT
dot-bracket secondary structure
((((.((..((((((((((.(((((((((.(((.(((((((((((.......)))))))))))))).))))))))).))))))))))))))))...
SIMILARITIES| miRBase zma-MIR171n: 1e-24 PMRD osa-miR171a: 1e-49 microPC miR171: 0.00002 | UniProt no hits RFAM MIR171_1: 2e-48 |
Identical with: osa-miR171a from PMRD (MNEST048895) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
