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ABOUT THIS RECORD
ID:
MNEST041984
species:
Oryza sativa
miRNA family:
MIR171
source:
miRBase, original name:
osa-MIR171d
(
MI0001135
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC
miRNA*
TGTTGGCCCGGCTCACTCAGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTGTAGCTATGA
TGTTGGCCCGGCTCACTCAGA
TGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAA
CTTC
TGATTGAGCCGTGCCAATATC
TCAGCACCAT
dot-bracket secondary structure
.....(((..((
(((((((.(((((((.(((((
((((.(((.(.((((..(((.(((((.......))))).)))...)))).)))).))))........
..))
))).))))))).)))))))))
..))).....
SIMILARITIES
miRBase
zma-MIR171d
:
0.000000007
PMRD
osa-miR171d
:
1e-72
microPC
miR171
:
0.0000004
UniProt
no hits
RFAM
MIR171_1: 2e-71
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"