ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR319
source: miRBase, original name: osa-MIR319a (MI0001098)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGTGCTCCC miRNA* AGAGAGCTCTCTTCAGTCCACTC mismatches: 2 bulges: 3 |
pre-miRNA
TGTGTAAGAAGAGAGCTCTCTTCAGTCCACTCTCAGATGGCTGTAGGGTTTTATTAGCTGCCGAATCATCCATTCACCTACCAAGAAAGTTGCAGGAGTG
TATCTCTTGGTAGCGGACTGGATGACGCGGGAGCTAAAATTTAGCTCTGCGCCGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTCAAGC
dot-bracket secondary structure
((.(((((..(.((((.((((((((((((..(.((((((((.((((((((...((((((.(((..(((((((.((..(((((((((....((((....))
))..)))))))))..)).)))))))..))).)))))).....)))))))))))))))).)..)))))))))))).)))))))))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TGTGTAAGAAGAGAGCTCTCTTCAGTCCACTCTCAGATGGCTGTAGGGTTTTATTAGCTGCCGAATCATCCATTCACCTACCAAGAAAGTTGCAGGAGTG
TATCTCTTGGTAGCGGACTGGATGACGCGGGAGCTAAAATTTAGCTCTGCGCCGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTCAAGC
dot-bracket secondary structure
((.(((((..(.((((.((((((((((((..(.((((((((.((((((((...((((((.(((..(((((((.((..(((((((((....((((....))
))..)))))))))..)).)))))))..))).)))))).....)))))))))))))))).)..)))))))))))).)))))))))).))...
SIMILARITIES| miRBase bdi-MIR319b: 1e-45 PMRD osa-miR319a: 5e-106 microPC miR319: 0.0000000006 | UniProt no hits RFAM MIR159: 1e-104 |
Identical with: osa-miR319a from PMRD (MNEST048914) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
