ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: miRBase, original name: osa-MIR396a (MI0001046)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATC
GGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAG
dot-bracket secondary structure
(((((..((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.((.....)))))))
...(((....))))))))))..))))))))).)))))))))))).))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATC
GGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAG
dot-bracket secondary structure
(((((..((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.((.....)))))))
...(((....))))))))))..))))))))).)))))))))))).))..)))))
SIMILARITIES| miRBase zma-MIR396h: 0.000000000008 PMRD osa-miR396a: 5e-84 microPC miR396: 1e-69 | UniProt no hits RFAM MIR396: 9e-83 |
Identical with: osa-miR396a from PMRD (MNEST048945) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
