ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: miRBase, original name: osa-MIR396f (MI0010563)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCACAGGCTTTCTTGAACT miRNA* TTCAAGAAAGTCCTTGGAAAAC mismatches: 4 bulges: 0 |
pre-miRNA
GCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGA
TCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
dot-bracket secondary structure
((((((...((((..((((((((((((((((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.(((((((
(....))))))))))))))).))))).)))))........))).))))))))))))))))..))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
GCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGA
TCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
dot-bracket secondary structure
((((((...((((..((((((((((((((((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.(((((((
(....))))))))))))))).))))).)))))........))).))))))))))))))))..))))...)))))).
SIMILARITIES| miRBase osa-MIR396f: 4e-97 PMRD osa-miR396f: 4e-97 microPC miR396: 1e-85 | UniProt no hits RFAM MIR396: 8e-96 |
Identical with: miR396 from microPC (MNEST046774) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y, Plant Cell. 21:3421-3435(2009)., "Rice MicroRNA effector complexes and targets"
[2] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
