ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR444
source: miRBase, original name: osa-MIR444c (MI0006975)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* GCTAGAGACAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
AGTTGCTGCAAGTGGAGGCGGCAAGCTAGAGACAGCAACTGCATATCTTGCAAGAAAATCGGTTTTATGGCCATACCGATGATTTTCTTGCAAGCTGTGC
AGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAA
dot-bracket secondary structure
.....(((((((.((((((((((((((.(((((((((((((((((.(((((((((((((((((...........))))))...))))))))))).)))))
)))))))))))).)))))))))))))).)))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, cloned
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
AGTTGCTGCAAGTGGAGGCGGCAAGCTAGAGACAGCAACTGCATATCTTGCAAGAAAATCGGTTTTATGGCCATACCGATGATTTTCTTGCAAGCTGTGC
AGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAA
dot-bracket secondary structure
.....(((((((.((((((((((((((.(((((((((((((((((.(((((((((((((((((...........))))))...))))))))))).)))))
)))))))))))).)))))))))))))).)))).)))..
SIMILARITIES| miRBase osa-MIR444c: 2e-74 PMRD pvi-miR444: 7e-43 microPC miR444: 2e-34 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.00005 RFAM MIR444: 3e-67 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, cloned
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
