ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR444
source: miRBase, original name: osa-MIR444e (MI0006977)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGCTGCCTCAAGCTT miRNA* GCTAGAGGCACCAACTGCATA mismatches: 2 bulges: 0 |
pre-miRNA
GGTTTTGTAACCAGGGGCAATAAGCTAGAGGCACCAACTGCATAACTTGCGAGAAACTTGTTGGATGATGATCTTGCCAATGATTTTGCCGCAAGTTATG
CAGTTGCTGCCTCAAGCTTACTGCCTTTGTTTGCTAAACC
dot-bracket secondary structure
(((((.((((.((((((((.((((((.((((((.(((((((((((((((((.((((.(..((((..(.....)...))))..)))))..)))))))))))
)))))).)))))).)))))).)))))))).)))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, cloned
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
GGTTTTGTAACCAGGGGCAATAAGCTAGAGGCACCAACTGCATAACTTGCGAGAAACTTGTTGGATGATGATCTTGCCAATGATTTTGCCGCAAGTTATG
CAGTTGCTGCCTCAAGCTTACTGCCTTTGTTTGCTAAACC
dot-bracket secondary structure
(((((.((((.((((((((.((((((.((((((.(((((((((((((((((.((((.(..((((..(.....)...))))..)))))..)))))))))))
)))))).)))))).)))))).)))))))).)))).)))))
SIMILARITIES| miRBase bdi-MIR444: 1e-25 PMRD osa-miR444e: 1e-75 microPC miR444: 0.0000001 | UniProt no hits RFAM MIR444: 2e-19 |
Identical with: osa-miR444e from PMRD (MNEST049006) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, cloned
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
