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ABOUT THIS RECORD

ID: MNEST042092
species: Oryza sativa
miRNA family: MIR445
source: miRBase, original name: osa-MIR445a (MI0001709)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAATTAGTGTATAAACATCCGAT

miRNA*
 TGAATGTTTGACACTAATTTGGA

mismatches: 1
bulges: 1
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pre-miRNA
 TCACATTGAATGTTTGACACTAATTTGGAGTATTAAACATAGACTAATAAAAAAACTAATTTCATAAATGAAAGCTAATCTGCGAGACGAATTTTTTAAG
CCTAATTAATCCATAATTATGAAAAGTTTACTGTAGCATCACATTGTCAAATCATGGTGTAATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGG
TTATAGAATAGGTTTTATAATTAGTGTATGTTTAATACTCTAAATTAGTGTATAAACATCCGATGTGA

dot-bracket secondary structure
((((((((.((((((((((((((((((((((((((((((((.((((((.(.((((((.(((..((((......((((((.(((((((((((((((((.((
.(((((((..((((.(((......((....))...(((......)))..))).))))..))))))).)).))))))))))))))))).))))))......
))))..))).)))))).).)))))).))))))))))))))))))))))))).))))))).))))))))


SIMILARITIES
miRBase osa-MIR445h: 8e-106

PMRD osa-miR445a: 3e-139

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"



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