ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR446 (MI0001718)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATATGGGAAATGG miRNA* ATTTCCCACATTTATATTGATGTT mismatches: 3 bulges: 0 |
pre-miRNA
AAATATGTACTTCCTTTGTTTCACAGTGTAAGTCATTATAAAATTTCCCACATTTATATTGATGTTAATGAATCTATATAGATATATATGTCTAGATTTA
TTAACATCAATATGAATATGGGAAATGGTAGAATAACTTACATTGTGAAACGGAGGGAGTATATAGAACTTGAAC
dot-bracket secondary structure
...((((((((((((((((((((((((((((((.(((.((..((((((((.(((((((((((((((((((((((((.(((........))).))))))))
))))))))))))))))).))))))))..)).))).))))))))))))))))))))))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"
AAATATGTACTTCCTTTGTTTCACAGTGTAAGTCATTATAAAATTTCCCACATTTATATTGATGTTAATGAATCTATATAGATATATATGTCTAGATTTA
TTAACATCAATATGAATATGGGAAATGGTAGAATAACTTACATTGTGAAACGGAGGGAGTATATAGAACTTGAAC
dot-bracket secondary structure
...((((((((((((((((((((((((((((((.(((.((..((((((((.(((((((((((((((((((((((((.(((........))).))))))))
))))))))))))))))).))))))))..)).))).))))))))))))))))))))))))))))))..........
SIMILARITIES| miRBase osa-MIR809d: 2e-50 PMRD osa-miR446: 2e-96 microPC miR446: 3e-33 | UniProt no hits RFAM MIR1122: 3e-49 |
Identical with: osa-miR446 from PMRD (MNEST049017) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"
