ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR528
source: miRBase, original name: osa-MIR528 (MI0003201)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CCTGTGCTTGCCTCTTCCATT mismatches: 2 bulges: 0 |
pre-miRNA
AGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATT
dot-bracket secondary structure
(((((((((((((.(((.(((((..(((((..(((..(((((.....)))))...)))..)))))))))).))).)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
AGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATT
dot-bracket secondary structure
(((((((((((((.(((.(((((..(((((..(((..(((((.....)))))...)))..)))))))))).))).)))))))))))))
SIMILARITIES| miRBase bdi-MIR528: 0.00000007 PMRD osa-miR528: 7e-45 microPC miR528: 2e-42 | UniProt no hits RFAM no hits |
Identical with: osa-miR528 from PMRD (MNEST049018) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
