ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR529
source: miRBase, original name: osa-MIR529b (MI0005804)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGAGAGAGAGTACAGCTT miRNA* GCTGTACGCTCCCTCTTCTTC mismatches: 2 bulges: 0 |
pre-miRNA
ATCGTGAAGGCTAAATGGAGAAGAGAGAGAGTACAGCTTTGGGCGGTTTAGTTGTTAGATGGTGGAAGTACTTGCGACGCCTACTACCCTTTTCACCAAG
GCTGTACGCTCCCTCTTCTTCTCTTAGCTTTTTATGAT
dot-bracket secondary structure
((((((((((((((..(((((((((.(((.((((((((((((..((..((((........((((...((....))..)))).))))..)).....)))))
))))))).))).)))))))))..))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
[2] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
ATCGTGAAGGCTAAATGGAGAAGAGAGAGAGTACAGCTTTGGGCGGTTTAGTTGTTAGATGGTGGAAGTACTTGCGACGCCTACTACCCTTTTCACCAAG
GCTGTACGCTCCCTCTTCTTCTCTTAGCTTTTTATGAT
dot-bracket secondary structure
((((((((((((((..(((((((((.(((.((((((((((((..((..((((........((((...((....))..)))).))))..)).....)))))
))))))).))).)))))))))..))))).)))))))))
SIMILARITIES| miRBase bdi-MIR529: 0.0000001 PMRD osa-miR529b: 2e-74 microPC no hits | UniProt no hits RFAM MIR529: 2e-71 |
Identical with: osa-miR529b from PMRD (MNEST049020) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
[2] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
