ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR530 (MI0003203)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTA miRNA* GGTGCAGAGGCAGATGCAAC mismatches: 2 bulges: 0 |
pre-miRNA
GTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGAAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAA
TGTTGTTCCTGGTCTCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTATGTCAT
dot-bracket secondary structure
((((((.((.(((((((((..(((((((((..((.(((((((.((.((((.((((((((.(((.(((......))))))..)))))))).))))..(((.
...)))......)))))))))..))..)))))))))..))))))))).)).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
[2] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
GTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGAAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAA
TGTTGTTCCTGGTCTCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTATGTCAT
dot-bracket secondary structure
((((((.((.(((((((((..(((((((((..((.(((((((.((.((((.((((((((.(((.(((......))))))..)))))))).))))..(((.
...)))......)))))))))..))..)))))))))..))))))))).)).))))))
SIMILARITIES| miRBase osa-MIR530: 8e-86 PMRD osa-miRf10677-akr: 2e-83 microPC miR530: 2e-71 | UniProt no hits RFAM MIR530: 0.00000004 |
Identical with: osa-miRf10677-akr from PMRD (MNEST049892) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
[2] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
