ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR531
source: miRBase, original name: osa-MIR531 (MI0003204)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGCCGGGGCTGCGTGCCGCCAT miRNA* AGCTGGCGCGCATCCCCGTCGAGCG mismatches: 5 bulges: 1 |
pre-miRNA
GGCGCCGCCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGCGCGCATCCCCGTCGAGCGTTGCTCGACGGTGCC
dot-bracket secondary structure
(((((((.(((((..((((((.(((((.((((((((((....)).)))))))).))))).))))))..))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
GGCGCCGCCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGCGCGCATCCCCGTCGAGCGTTGCTCGACGGTGCC
dot-bracket secondary structure
(((((((.(((((..((((((.(((((.((((((((((....)).)))))))).))))).))))))..))))).)))))))
SIMILARITIES| miRBase osa-MIR531b: 3e-31 PMRD osa-miR531: 9e-41 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR531 from PMRD (MNEST049021) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
