ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR531
source: miRBase, original name: osa-MIR531b (MI0008222)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGCCGGGGCTGCGTGCCG miRNA* GGTGCGCATCCCCGTCGAGCG mismatches: 4 bulges: 1 |
pre-miRNA
CCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGTGCGCATCCCCGTCGAGCGTTGCTCGACG
dot-bracket secondary structure
.(((((..((((((.(((((.((((..((((....)).))..)))).))))).))))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGTGCGCATCCCCGTCGAGCGTTGCTCGACG
dot-bracket secondary structure
.(((((..((((((.(((((.((((..((((....)).))..)))).))))).))))))..)))))...
SIMILARITIES| miRBase osa-MIR531: 3e-31 PMRD osa-miR531b: 1e-33 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR531b from PMRD (MNEST049022) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
