ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR535
source: miRBase, original name: osa-MIR535 (MI0003505)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCTTTCTCCCGTTGTCACT mismatches: 1 bulges: 0 |
pre-miRNA
GGCGGTGACAACGAGAGAGAGCACGCCGGTGCGGCGGTCACGGTGAGCCGGCCCGCGGCGGCGTACCTGCGTGCTTTCTCCCGTTGTCACTGCC
dot-bracket secondary structure
(((((((((((((.((((((((((((.((((((((((.(.(((....)))).)))).....)))))).)))))))))))).)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
GGCGGTGACAACGAGAGAGAGCACGCCGGTGCGGCGGTCACGGTGAGCCGGCCCGCGGCGGCGTACCTGCGTGCTTTCTCCCGTTGTCACTGCC
dot-bracket secondary structure
(((((((((((((.((((((((((((.((((((((((.(.(((....)))).)))).....)))))).)))))))))))).)))))))))))))
SIMILARITIES| miRBase ppt-MIR535d: 0.00000007 PMRD osa-miR535: 2e-48 microPC miR535: 2e-42 | UniProt no hits RFAM MIR535: 5e-46 |
Identical with: miR535 from microPC (MNEST045967) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
