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ABOUT THIS RECORD

ID: MNEST042111
species: Oryza sativa
miRNA family: MIR806
source: miRBase, original name: osa-MIR806b (MI0005211)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGTGCTAAAAAGTCAACGGTG

miRNA*
CCGTTGACTTTTTAAGTACGTGT

mismatches: 0
bulges: 1

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pre-miRNA
TCAAAATGTTTGACACCGTTGACTTTTTAAGTACGTGTTTGACTATTCGTCTTATTCAAAAAAATTTAAGTAATTATTTATTCTTTTTATATCATTTGAT
TCATTGTTAAATATACTTTCATGTACACATATAATTTTACATATTTCACAAATTTTTTTTAATAAGACGAACAGTCAAGAATGTGCTAAAAAGTCAACGG
TG
TCAAACAGTTTGA


dot-bracket secondary structure
(((((.(((((((((((((((((((((((.((((((.(((((((.(((((((((((.((((((((((..........................(((((((
.....)))))))........(((((............))))).......)))))))))).))))))))))).))))))).))))))))))))))))))))
))
))))))).)))))



SIMILARITIES
miRBase osa-MIR806g: 5e-60

PMRD osa-miR806b: 2e-93

microPC miR806: 4e-33
UniProt no hits

RFAM MIR806: 1e-58

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




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