ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR807
source: miRBase, original name: osa-MIR807a (MI0005209)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTCATCTCACAGGTGAATCC miRNA* ATTCACCCGTGAGATGACTTG mismatches: 3 bulges: 0 |
pre-miRNA
AACCACACTATCAATAAATAGATTCACCCGTGAGATGACTTGGTTGTTCCACATAGGACAATGACATGCATCCTATTACCAGCCATCTCATGAAATTAAT
AGGATGCCACGTCGACTTGGTTGTTCCACATAGGACAATGACATGCATCCTATTACCAGCCATCTCATGAAATTAATAGGATGCCACGTCCTCATCCTAG
GTAAAATAACCACGTCATCTCACAGGTGAATCCATTCATTGATATTGTGGTT
dot-bracket secondary structure
(((((((.(((((((.(((.((((((((.((((((((((.((((((((..((.(((((....(((..(((((((((((......((.((((((.((((((
(((((((...(((......(((((((......))))))))))..)))))))))))......)).)))))).)))))))))))))...)))....))))).
))..)))))))).)))))))))).)))))))).))).))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
AACCACACTATCAATAAATAGATTCACCCGTGAGATGACTTGGTTGTTCCACATAGGACAATGACATGCATCCTATTACCAGCCATCTCATGAAATTAAT
AGGATGCCACGTCGACTTGGTTGTTCCACATAGGACAATGACATGCATCCTATTACCAGCCATCTCATGAAATTAATAGGATGCCACGTCCTCATCCTAG
GTAAAATAACCACGTCATCTCACAGGTGAATCCATTCATTGATATTGTGGTT
dot-bracket secondary structure
(((((((.(((((((.(((.((((((((.((((((((((.((((((((..((.(((((....(((..(((((((((((......((.((((((.((((((
(((((((...(((......(((((((......))))))))))..)))))))))))......)).)))))).)))))))))))))...)))....))))).
))..)))))))).)))))))))).)))))))).))).))))))).)))))))
SIMILARITIES| miRBase osa-MIR807c: 7e-35 PMRD osa-miR807a: 3e-142 microPC miR807: 2e-16 | UniProt no hits RFAM MIR807: 4e-52 |
Identical with: osa-miR807a from PMRD (MNEST049032) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
