ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR808 (MI0005220)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAATGTGGGAAATGTAAGAA miRNA* CTAGCATTTTCCACATTCATAT mismatches: 1 bulges: 0 |
pre-miRNA
ACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATC
AATATGAATGTGGGAAATGTAAGAATGACTTACATTGTGAAATGGAGGGAGT
dot-bracket secondary structure
(((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))
)))))))))))))))))))).)))))))))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
ACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATC
AATATGAATGTGGGAAATGTAAGAATGACTTACATTGTGAAATGGAGGGAGT
dot-bracket secondary structure
(((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))
)))))))))))))))))))).)))))))))))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR809d: 1e-63 PMRD osa-miR808: 8e-83 microPC miR809: 7e-31 | UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0005 RFAM MIR1122: 3e-67 |
Identical with: osa-miR808 from PMRD (MNEST049035) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
