ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR809f (MI0005226)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATGTGAGAAATGTTAGAAT miRNA* TCTATCATTTCTCACATTCATA mismatches: 1 bulges: 0 |
pre-miRNA
TACTCCCTCCGTTTCACAATTTAAGTCATTCTATCATTTCTCACATTCATATTAATGTTAATGAATCTAGACATATATATCTATCTAAATTCATTACCAT
CAATATGAATGTGAGAAATGTTAGAATGATTTAAATTGTGAAACGGAGGAAGTA
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((.(((((((((((((((((((.(((.((((((((.((((............)))).)))))))).)))
.))))))))))))))))))).)))))))))))))))))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
TACTCCCTCCGTTTCACAATTTAAGTCATTCTATCATTTCTCACATTCATATTAATGTTAATGAATCTAGACATATATATCTATCTAAATTCATTACCAT
CAATATGAATGTGAGAAATGTTAGAATGATTTAAATTGTGAAACGGAGGAAGTA
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((.(((((((((((((((((((.(((.((((((((.((((............)))).)))))))).)))
.))))))))))))))))))).)))))))))))))))))))))))))))).))))
SIMILARITIES| miRBase osa-MIR809d: 4e-60 PMRD osa-miR809f: 5e-84 microPC miR809: 6e-28 | UniProt no hits RFAM MIR1122: 4e-54 |
Identical with: osa-miR809f from PMRD (MNEST049041) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
