ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812e (MI0005237)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACGGACGGTTAAACGTTGGAC miRNA* CCAACTTTGACCGTCCGTCTT mismatches: 1 bulges: 1 |
pre-miRNA
GTTTTAGTGCCCAACTTTGACCGTCCGTCTTATTTGAAAATTTTTTTATTACTATTTTTATTGTTATTAGATGATAAAATATAAATATTACTTCATGCGT
GACTTAATTTTTAAAAAAATTTCATAAAATTTTTAAATAAGACGGACGGTTAAACGTTGGACACGGAAAC
dot-bracket secondary structure
(((((.(((.((((((((((((((((((((((((((((((((((...........((((((..((....))..))))))..((((.((((..(((....)
))..)))).))))............))))))))))))))))))))))))))))).))))).))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
GTTTTAGTGCCCAACTTTGACCGTCCGTCTTATTTGAAAATTTTTTTATTACTATTTTTATTGTTATTAGATGATAAAATATAAATATTACTTCATGCGT
GACTTAATTTTTAAAAAAATTTCATAAAATTTTTAAATAAGACGGACGGTTAAACGTTGGACACGGAAAC
dot-bracket secondary structure
(((((.(((.((((((((((((((((((((((((((((((((((...........((((((..((....))..))))))..((((.((((..(((....)
))..)))).))))............))))))))))))))))))))))))))))).))))).))).)))))
SIMILARITIES| miRBase osa-MIR812a: 7e-25 PMRD osa-miR812e: 2e-68 microPC miR812: 0.00000003 | UniProt no hits RFAM MIR812: 3e-67 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
