ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812h (MI0008297)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGACGGATGATTAAAGTTGGACA miRNA* CCCAACTTTAATCATCTGTTTTAT mismatches: 3 bulges: 0 |
pre-miRNA
TTGTACTCCCTCCGTCCCATTTTAAGTGCAATCATGAGTTTCGCCCAACTTTAATCATCTGTTTTATTTGAACTTTTTATAAATAGTATTTTTATTGTTA
TGAGATTATAAAATTTAAATAAGACGGATGATTAAAGTTGGACACGAAAACTCATGGCTACACTTACAATGAAATGGAGGGGTACTA
dot-bracket secondary structure
..((((.((((((((..((((.((((((.(..(((((((((((.((((((((((((((((((((((((((((..((((((((((((((....))))))..
.....))))))))))))))))))))))))))))))))))))...)).)))))))))..).)))))).))))..))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
TTGTACTCCCTCCGTCCCATTTTAAGTGCAATCATGAGTTTCGCCCAACTTTAATCATCTGTTTTATTTGAACTTTTTATAAATAGTATTTTTATTGTTA
TGAGATTATAAAATTTAAATAAGACGGATGATTAAAGTTGGACACGAAAACTCATGGCTACACTTACAATGAAATGGAGGGGTACTA
dot-bracket secondary structure
..((((.((((((((..((((.((((((.(..(((((((((((.((((((((((((((((((((((((((((..((((((((((((((....))))))..
.....))))))))))))))))))))))))))))))))))))...)).)))))))))..).)))))).))))..))))))))))))..
SIMILARITIES| miRBase osa-MIR812g: 3e-21 PMRD osa-miR812h: 1e-103 microPC miR812: 0.0000006 | UniProt no hits RFAM MIR806: 2e-19 |
Identical with: osa-miR812h from PMRD (MNEST049055) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
