ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812i (MI0008298)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGACGGATGATTAAAGTTGGACA miRNA* TTCAACTTAGATCATCTGTCTTAT mismatches: 2 bulges: 0 |
pre-miRNA
TAGAACTCCCTCCATCCAAAAATAAGCGTAGCCATAAGTTTTCGTCTTCAACTTAGATCATCTGTCTTATTTGAAACTTTTTTATGATTAGTATTTTTTT
ATTAGATTGTAAAACATGAATATTACTTTATGCATGACTTATATTATTTTAGATTTTCTAAAAAAAATAAATAAGACGGATGATTAAAGTTGGACACGAA
AACTCAGGGCTGCGCTTATTTTGGGAATGAGGGAGTACGGAG
dot-bracket secondary structure
..(.((((((((..(((.(((((((((((((((...(((((((((.((((((((.((((((((((((((((((......(((((..(((((((......)
))).)))..)))))((((.(((......))).))))..........((((((.....))))))....)))))))))))))))))).)))))))).)))))
))))...))))))))))))))).)))..)))))))).)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
TAGAACTCCCTCCATCCAAAAATAAGCGTAGCCATAAGTTTTCGTCTTCAACTTAGATCATCTGTCTTATTTGAAACTTTTTTATGATTAGTATTTTTTT
ATTAGATTGTAAAACATGAATATTACTTTATGCATGACTTATATTATTTTAGATTTTCTAAAAAAAATAAATAAGACGGATGATTAAAGTTGGACACGAA
AACTCAGGGCTGCGCTTATTTTGGGAATGAGGGAGTACGGAG
dot-bracket secondary structure
..(.((((((((..(((.(((((((((((((((...(((((((((.((((((((.((((((((((((((((((......(((((..(((((((......)
))).)))..)))))((((.(((......))).))))..........((((((.....))))))....)))))))))))))))))).)))))))).)))))
))))...))))))))))))))).)))..)))))))).)....
SIMILARITIES| miRBase osa-MIR812j: 1e-17 PMRD osa-miR812i: 2e-109 microPC miR812: 0.00001 | UniProt no hits RFAM MIR812: 8e-63 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
