ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812k (MI0017245)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAACGGTTAAAGTTGGACGCGG miRNA* GCGCTCAATTTTGATCGTCCGTCT mismatches: 3 bulges: 0 |
pre-miRNA
CTCCGTTTCATAATAAGTGCAGCCATGAGTTTCCGCGCTCAATTTTGATCGTCCGTCTTATTTGAAATTTTTTTATAATTAGCATTTTTGTTGTTATGAG
ATGATAAAACATGAATAGTACTTTACTTGTGACTTATGTTTTTAAATTTTTTCAAAAAATTTTTAATAAGACGAACGGTTAAAGTTGGACGCGGAAAACC
ATGGCTACACTTATTTTGAGACGGAG
dot-bracket secondary structure
((((((((((.((((((((.(((((((..((((((((..(((((((((((((.(((((((((.((((((((((......(((((....)))))....(((
((...(((((((((....(((.......)))..)))))))))...)))))...)))))))))).))))))))).)))))))))))))..))))))))..)
)))))).)))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
CTCCGTTTCATAATAAGTGCAGCCATGAGTTTCCGCGCTCAATTTTGATCGTCCGTCTTATTTGAAATTTTTTTATAATTAGCATTTTTGTTGTTATGAG
ATGATAAAACATGAATAGTACTTTACTTGTGACTTATGTTTTTAAATTTTTTCAAAAAATTTTTAATAAGACGAACGGTTAAAGTTGGACGCGGAAAACC
ATGGCTACACTTATTTTGAGACGGAG
dot-bracket secondary structure
((((((((((.((((((((.(((((((..((((((((..(((((((((((((.(((((((((.((((((((((......(((((....)))))....(((
((...(((((((((....(((.......)))..)))))))))...)))))...)))))))))).))))))))).)))))))))))))..))))))))..)
)))))).)))))))).))))))))))
SIMILARITIES| miRBase osa-MIR812m: 4e-27 PMRD osa-miR812j: 0.00000000000001 microPC miR812: 0.0000007 | UniProt no hits RFAM MIR812: 9e-44 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
