ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812m (MI0017247)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAACGGTTAAAGTTGGACGCGG miRNA* GCGCCCAACTTTGATCGTCCGTCT mismatches: 2 bulges: 0 |
pre-miRNA
AGTCATAAGTTTCCGCGCCCAACTTTGATCGTCCGTCTTATTTGAAATTTTTTTATAATTAGTATTTTTTGTTGTTATGAGATAATAAAATATGAATAGT
ACTTTACTCGTGACTTATGTTTTTAATTTTTTTTAAAAAAATTATAAATAAGACGAACGGTTAAAGTTGGACGCGGAAAACTATAGCT
dot-bracket secondary structure
((..(((..((((((((.((((((((((((((.(((((((((((.((((((((((.((((((...........((((((((....((((.(((.....))
).))))))))))))........)))))).....)))))))))).))))))))))).)))))))))))))).))))))))..)))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
AGTCATAAGTTTCCGCGCCCAACTTTGATCGTCCGTCTTATTTGAAATTTTTTTATAATTAGTATTTTTTGTTGTTATGAGATAATAAAATATGAATAGT
ACTTTACTCGTGACTTATGTTTTTAATTTTTTTTAAAAAAATTATAAATAAGACGAACGGTTAAAGTTGGACGCGGAAAACTATAGCT
dot-bracket secondary structure
((..(((..((((((((.((((((((((((((.(((((((((((.((((((((((.((((((...........((((((((....((((.(((.....))
).))))))))))))........)))))).....)))))))))).))))))))))).)))))))))))))).))))))))..)))..))
SIMILARITIES| miRBase osa-MIR812k: 3e-27 PMRD osa-miR812g: 7e-16 microPC miR812: 0.00004 | UniProt no hits RFAM MIR806: 1e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
